Discover our collection of 5 research tools and applications for epigenomics.
Found 5 of 5 tools
A mapping pipeline for HiC interaction data. Performs independent mapping on each end of the interaction pair and removes commonly found artefacts.
Jointly defining cell types from multiple single-cell datasets using LIGER. LIGER (Linked Inference of Genomic Experimental Relationships). LIGER (liger) is a package for integrating and analyzing multiple single-cell datasets, developed by the Macosko lab and maintained/extended by the Welch lab. It relies on integrative non-negative matrix factorization to identify shared and dataset-specific factors.
A clustering approach for identification of enriched domains from histone modification ChIP-seq data.
SnapATAC (Single Nucleus Analysis Pipeline for ATAC-seq) is a fast, accurate and comprehensive method for analyzing single cell ATAC-seq datasets.
Epigenomics Single Cell Analysis in Python.