Genetics Tools

Tool for single-species active module discovery.

Computational tool to identify important genes from the recent genome-scale CRISPR-Cas9 knockout screens technology.

Calls structural variants (SVs) and indels from mapped paired-end sequencing reads.

Scalable toolkit for analyzing single-cell gene expression data. It includes preprocessing, visualization, clustering, pseudotime and trajectory inference and differential expression testing. The Python-based implementation efficiently deals with datasets of more than one million cells.

Variant tool set that discovers short variants from Next Generation Sequencing data.