Discover our collection of 5 research tools and applications for phylogeny.
Found 5 of 5 tools
Gubbins is a tool for rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences.
Software package for the analysis of genetic sequences using techniques in phylogenetics, molecular evolution, and machine learning.
QIIME 2™ is a next-generation microbiome bioinformatics platform that is extensible, free, open source, and community developed.
TGS-GapCloser is a fast and accurately passing through the Bermuda in large genome using error-prone third-generation long reads.
The UShER toolkit includes a set of tools for for rapid, accurate placement of samples to existing phylogenies. While not restricted to SARS-CoV-2 phylogenetic analyses, it has enabled real-time phylogenetic analyses and genomic contact tracing in that its placement is orders of magnitude faster and more memory-efficient than previous methods.