Discover our collection of 6 research tools and applications for sequence analysis.
Found 3 of 3 tools
The Genome Analysis Toolkit (GATK) is a set of bioinformatic tools for analyzing high-throughput sequencing (HTS) and variant call format (VCF) data. The toolkit is well established for germline short variant discovery from whole genome and exome sequencing data. GATK4 expands functionality into copy number and somatic analyses and offers pipeline scripts for workflows.
MAFFT (Multiple Alignment using Fast Fourier Transform) is a high speed multiple sequence alignment program.
SAMtools are widely used for processing and analysing high-throughput sequencing data. They include tools for file format conversion and manipulation, sorting, querying, statistics, variant calling, and effect analysis amongst other methods.