Discover our collection of 7 research tools and applications for microbiology.
Found 7 of 7 tools
PICRUSt2 (Phylogenetic Investigation of Communities by Reconstruction of Unobserved States) is a software for predicting functional abundances based only on marker gene sequences.
Fast and accurate in silico Mycobacterium spoligotyping from sequence reads.
Mass screening of contigs for antimicrobial resistance or virulence genes.
Anvi’o is an open-source, community-driven analysis and visualization platform for microbial ‘omics. It brings together many aspects of today’s cutting-edge strategies including genomics, metagenomics, metatranscriptomics, pangenomics, metapangenomics, phylogenomics, and microbial population genetics in an integrated and easy-to-use fashion through extensive interactive visualization capabilities.
A very rapid and memory-efficient system for the classification of DNA sequences from microbial samples. The system uses a novel indexing scheme based on the Burrows-Wheeler transform and the Ferragina-Manzini index, optimized specifically for the metagenomic classification problem. Together these advances enable timely and accurate analysis of large metagenomics data sets on conventional desktop computers.
FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI). ANI is defined as mean nucleotide identity of orthologous gene pairs shared between two microbial genomes. FastANI supports pairwise comparison of both complete and draft genome assemblies.
Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure