Discover our collection of 5 research tools and applications for genotype and phenotype.
Found 5 of 5 tools
CryptoGenotyper is a bioinformatics tool for rapid Cryptosporidium identification. The CryptoGenotyper is a fast and reproducible tool that can be used to classify the genotype of Cryptosporidium samples by directly analyzing the DNA electropherogram files that correspond to two of its characteristic gene markers: SSU rRNA and gp60.
Gubbins is a tool for rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences.
OptiType is a novel HLA genotyping algorithm based on integer linear programming, capable of producing accurate 4-digit HLA genotyping predictions from NGS data by simultaneously selecting all major and minor HLA Class I alleles.
Tools for M. tuberculosis DNA fingerprinting (spoligotyping)
Scripts for parsing Mykrobe predict results for Shigella sonnei.